In spipy/scripts folder, there are scripts for users to use spipy easily. The installation procedure will generate executable files (in bin folder) to run these scripts.

NOTICE All of the mask file used in spipy scripts are required to contain a two-value array, where masked pixels should take the value of 1 while unmasked pixels are 0.

The scripts only receive command line arguments and output result files.

Usage and Document

• spi_phasing
  • Phase retrieval using multiple algorithms
  • Use ‘-h’ option to see details
• spi_simulator
  • Single particle diffraction simulation
  • Use ‘-h’ option to see details
• spi_emcsetup
  • Set up EMC running environment
  • Use ‘-h’ option to see details
• spi_viewer
  • 2D/3D data viewer
  • 2D mask maker
  • Forked from this repo
  • Use ‘-h’ option to see details
• spi_events
  • Parse CXI/HDF5/TIF… files and list events
  • Use ‘-h’ option to see details
• spi_qcenter
  • Calculate coordinates of central point (q=0) of diffraction patterns
  • Use ‘-h’ option to see details
• spi_darkcal
  • Dark calibration script for SPI data
  • Use ‘-h’ option to see details
• spi_hitfinder
  • Hit finding script for SPI data
  • Use ‘-h’ option to see details