Requirements

• Linux (Ubuntu/Centos/…) or MacOS
• Anaconda environment, conda version > 4.4
• gcc/g++ >= 4.8
• (optional) openmpi >= 2.0 and gsl >= 1.0

Install

• Download from github repository, or

  [user@linux ~]$ git clone https://github.com/LiuLab-CSRC/spipy -b v3.2
  

• Go into the folder and run installation script

  [user@linux ~]$ cd spipy
  [user@linux spipy]$ chmod u+x ./make_all.sh
  [user@linux spipy]$ conda activate base
  # Full compiling and environment setup
  (base)[user@linux spipy]$ ./make_all.sh
  # Do not compile EMC part (which needs openmpi and gsl)
  (base)[user@linux spipy]$ ./make_all.sh -x
  # Do not check or setup anaconda environment
  (base)[user@linux spipy]$ ./make_all.sh -e
  

• Notice ! Do NOT delete or move original spipy folder after installation !